The construction and operation of the Three Gorges Reservoir (TGR), the largest hydropower dam in the world, has had significant consequences for the hydrology of riparian zones along the Yangtze river. Little is known about how such changes in hydrology might affect the levels of nutrients and organic matter (OM) in riparian soils. We conducted a nine-year study on the spatio-temporal dynamics and dominant environmental correlates of nutrients and OM in riparian soils along a 600 km section of the Yangtze. These soils have been exposed to a disrupted hydrological regime since the TGR's establishment in 2008. Vegetation surveys were also conducted from 2012 to 2016 to assess relationships between soil chemical properties and vegetation community properties under altered hydrology. Across the stream gradient, concentrations of total potassium (K) increased by 54% since the TGR's establishment. The opposite occurred for SOM and available K, concentrations of which were 35% and 33% lower in 2016, respectively, than those of 2008. The rate of increase in total K tended to be more rapid at the middle section of the stream gradient. Moreover, concentrations of SOM, total N, total K, and available phosphorus (P) and K tended to be particularly high at the middle section. The spatio-temporal distributions of nutrients were strongly positively related to the contents of fine soil particles (i.e., silt and clay).Moreover, the aboveground biomass was negatively correlated with the nutrient dynamics. Our results indicate that the control of the nutrient release in the middle reaches and lower elevations where fine particles tend to accumulate, will be essential for maintaining the health of aquatic and riparian ecosystems upstream of the TGR.